J3_6ZTM_033

3D structure

PDB id

6ZTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state without NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6ZTM|1|BA|A|504, 6ZTM|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTM_033 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1248

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6ZTM|1|BA|G|30
6ZTM|1|BA|C|31
*
6ZTM|1|BA|G|474
6ZTM|1|BA|C|475
6ZTM|1|BA|G|476
6ZTM|1|BA|A|477
6ZTM|1|BA|A|478
6ZTM|1|BA|A|479
6ZTM|1|BA|A|480
6ZTM|1|BA|G|481
6ZTM|1|BA|A|482
6ZTM|1|BA|A|483
6ZTM|1|BA|C|484
*
6ZTM|1|BA|G|496
6ZTM|1|BA|A|497
6ZTM|1|BA|G|498
6ZTM|1|BA|U|499
6ZTM|1|BA|G|500
6ZTM|1|BA|A|501
6ZTM|1|BA|A|502
6ZTM|1|BA|A|503
6ZTM|1|BA|A|504
6ZTM|1|BA|A|505
6ZTM|1|BA|G|506
6ZTM|1|BA|A|507
6ZTM|1|BA|A|508
6ZTM|1|BA|C|509
6ZTM|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L20

Chain BT

50S ribosomal protein L22

Chain BV

50S ribosomal protein L24