J3_6ZTN_010

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

6ZTN|1|AA|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTN_010 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1223

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6ZTN|1|AA|U|1073
6ZTN|1|AA|G|1074
*
6ZTN|1|AA|U|1083
6ZTN|1|AA|G|1084
6ZTN|1|AA|U|1085
6ZTN|1|AA|U|1086
6ZTN|1|AA|G|1087
*
6ZTN|1|AA|C|1098
6ZTN|1|AA|G|1099
6ZTN|1|AA|C|1100
6ZTN|1|AA|A|1101
6ZTN|1|AA|A|1102

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AE

30S ribosomal protein S5

Chain AU

30S ribosomal protein S21