J3_6ZTN_021

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTN_021 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0793

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6ZTN|1|BA|C|2091
6ZTN|1|BA|U|2092
6ZTN|1|BA|G|2093
*
6ZTN|1|BA|C|2196
6ZTN|1|BA|U|2197
6ZTN|1|BA|A|2198
6ZTN|1|BA|A|2199
6ZTN|1|BA|C|2200
*
6ZTN|1|BA|G|2223
6ZTN|1|BA|G|2224
6ZTN|1|BA|A|2225
6ZTN|1|BA|C|2226
6ZTN|1|BA|A|2227
6ZTN|1|BA|G|2228

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BH

50S ribosomal protein L9

Chain BY

50S ribosomal protein L28