3D structure

PDB id
6ZTP (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in uncoupled state 6
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
6ZTP|1|BA|U|34, 6ZTP|1|BA|U|448, 6ZTP|1|BA|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ZTP_033 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.0515
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6ZTP|1|BA|C|32
6ZTP|1|BA|C|33
6ZTP|1|BA|U|34
6ZTP|1|BA|G|35
*
6ZTP|1|BA|C|445
6ZTP|1|BA|G|446
6ZTP|1|BA|A|447
6ZTP|1|BA|U|448
6ZTP|1|BA|A|449
6ZTP|1|BA|G|450
6ZTP|1|BA|U|451
6ZTP|1|BA|G|452
6ZTP|1|BA|A|453
6ZTP|1|BA|A|454
6ZTP|1|BA|C|455
6ZTP|1|BA|C|456
6ZTP|1|BA|A|457
6ZTP|1|BA|G|458
6ZTP|1|BA|U|459
6ZTP|1|BA|A|460
6ZTP|1|BA|C|461
*
6ZTP|1|BA|G|468
6ZTP|1|BA|G|469
6ZTP|1|BA|A|470
6ZTP|1|BA|A|471
6ZTP|1|BA|A|472
6ZTP|1|BA|G|473

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B4
50S ribosomal protein L34
Chain BE
50S ribosomal protein L4
Chain BR
50S ribosomal protein L20
Chain BU
50S ribosomal protein L23

Coloring options:


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