J3_6ZU5_029

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUCG*CGAUAGCGCACAAGUAC*GGGACG

Length

27 nucleotides

Bulged bases

6ZU5|1|L50|C|24, 6ZU5|1|L50|U|381, 6ZU5|1|L50|A|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZU5_029 not in the Motif Atlas

Geometric match to J3_5TBW_061

Geometric discrepancy: 0.0698

The information below is about J3_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24554.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

7

Unit IDs

6ZU5|1|L50|C|22
6ZU5|1|L50|U|23
6ZU5|1|L50|C|24
6ZU5|1|L50|G|25
*
6ZU5|1|L50|C|378
6ZU5|1|L50|G|379
6ZU5|1|L50|A|380
6ZU5|1|L50|U|381
6ZU5|1|L50|A|382
6ZU5|1|L50|G|383
6ZU5|1|L50|C|384
6ZU5|1|L50|G|385
6ZU5|1|L50|C|386
6ZU5|1|L50|A|387
6ZU5|1|L50|C|388
6ZU5|1|L50|A|389
6ZU5|1|L50|A|390
6ZU5|1|L50|G|391
6ZU5|1|L50|U|392
6ZU5|1|L50|A|393
6ZU5|1|L50|C|394
*
6ZU5|1|L50|G|401
6ZU5|1|L50|G|402
6ZU5|1|L50|G|403
6ZU5|1|L50|A|404
6ZU5|1|L50|C|405
6ZU5|1|L50|G|406

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LC0

uL4

Chain LJJ

eL37

Chain LLL

eL39

Chain LY0

uL24