J3_6ZU9_015

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6ZU9|1|2|U|227, 6ZU9|1|2|U|238

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZU9|1|2|A|213
6ZU9|1|2|G|214
6ZU9|1|2|A|215
6ZU9|1|2|U|216
6ZU9|1|2|A|217
6ZU9|1|2|A|218
6ZU9|1|2|A|219
6ZU9|1|2|A|220
6ZU9|1|2|A|221
6ZU9|1|2|A|222
6ZU9|1|2|U|223
6ZU9|1|2|C|224
6ZU9|1|2|A|225
6ZU9|1|2|A|226
6ZU9|1|2|U|227
6ZU9|1|2|G|228
*
6ZU9|1|2|C|237
6ZU9|1|2|U|238
6ZU9|1|2|C|239
6ZU9|1|2|U|240
6ZU9|1|2|U|241
6ZU9|1|2|U|242
6ZU9|1|2|G|243
*
6ZU9|1|2|C|250
6ZU9|1|2|A|251
6ZU9|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A