J3_6ZVI_007
3D structure
- PDB id
- 6ZVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mbf1-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 6ZVI|1|h|G|1199, 6ZVI|1|h|G|1201, 6ZVI|1|h|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZVI_007 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0629
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6ZVI|1|h|C|1180
6ZVI|1|h|U|1181
6ZVI|1|h|U|1182
6ZVI|1|h|A|1183
6ZVI|1|h|A|1184
6ZVI|1|h|U|1185
6ZVI|1|h|U|1186
6ZVI|1|h|U|1187
*
6ZVI|1|h|G|1198
6ZVI|1|h|G|1199
6ZVI|1|h|G|1200
6ZVI|1|h|G|1201
6ZVI|1|h|A|1202
6ZVI|1|h|A|1203
6ZVI|1|h|A|1204
6ZVI|1|h|C|1205
6ZVI|1|h|U|1206
6ZVI|1|h|C|1207
6ZVI|1|h|A|1208
6ZVI|1|h|C|1209
*
6ZVI|1|h|G|1454
6ZVI|1|h|G|1455
6ZVI|1|h|C|1456
6ZVI|1|h|C|1457
6ZVI|1|h|G|1458
Current chains
- Chain h
- 18S rRNA
Nearby chains
- Chain A
- 40S ribosomal protein S18-A
- Chain C
- RPS20 isoform 1
- Chain O
- RPS29A isoform 1
- Chain Q
- RPS31 isoform 1
- Chain d
- Transfer RNA; tRNA
- Chain x
- RPS15 isoform 1
Coloring options: