J3_6ZVI_014

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6ZVI|1|h|U|227, 6ZVI|1|h|U|238, 6ZVI|1|h|C|239, 6ZVI|1|h|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVI|1|h|A|213
6ZVI|1|h|G|214
6ZVI|1|h|A|215
6ZVI|1|h|U|216
6ZVI|1|h|A|217
6ZVI|1|h|A|218
6ZVI|1|h|A|219
6ZVI|1|h|A|220
6ZVI|1|h|A|221
6ZVI|1|h|A|222
6ZVI|1|h|U|223
6ZVI|1|h|C|224
6ZVI|1|h|A|225
6ZVI|1|h|A|226
6ZVI|1|h|U|227
6ZVI|1|h|G|228
*
6ZVI|1|h|C|237
6ZVI|1|h|U|238
6ZVI|1|h|C|239
6ZVI|1|h|U|240
6ZVI|1|h|U|241
6ZVI|1|h|U|242
6ZVI|1|h|G|243
*
6ZVI|1|h|C|250
6ZVI|1|h|A|251
6ZVI|1|h|U|252

Current chains

Chain h

18S rRNA

Nearby chains

Chain m

40S ribosomal protein S4-A

Chain o

40S ribosomal protein S6-A

Chain q

40S ribosomal protein S8-A

Chain t

40S ribosomal protein S11-A