J3_6ZVK_009
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZVK_009 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.2005
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6ZVK|1|K3|U|1340
6ZVK|1|K3|C|1341
6ZVK|1|K3|U|1342
6ZVK|1|K3|U|1343
6ZVK|1|K3|A|1344
6ZVK|1|K3|G|1345
*
6ZVK|1|K3|C|1384
6ZVK|1|K3|G|1385
6ZVK|1|K3|A|1386
6ZVK|1|K3|G|1387
6ZVK|1|K3|A|1388
6ZVK|1|K3|C|1389
*
6ZVK|1|K3|G|1481
6ZVK|1|K3|C|1482
6ZVK|1|K3|A|1483
6ZVK|1|K3|A|1484
6ZVK|1|K3|U|1485
6ZVK|1|K3|A|1486
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain B3
- 40S RIBOSOMAL PROTEIN US9
- Chain C3
- 40S RIBOSOMAL PROTEIN ES17
- Chain H3
- ribosomal protein uS14
- Chain I3
- Ribosomal_S10 domain-containing protein
- Chain W3
- S5 DRBM domain-containing protein
- Chain Y3
- Ribosomal protein S3
Coloring options: