J3_6ZVK_010

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZVK_010 not in the Motif Atlas

Geometric match to J3_8C3A_085

Geometric discrepancy: 0.1504

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6ZVK|1|K3|U|1350
6ZVK|1|K3|G|1351
*
6ZVK|1|K3|U|1360
6ZVK|1|K3|G|1361
6ZVK|1|K3|U|1362
6ZVK|1|K3|C|1363
*
6ZVK|1|K3|G|1375
6ZVK|1|K3|A|1376
6ZVK|1|K3|U|1377
6ZVK|1|K3|A|1378
6ZVK|1|K3|A|1379

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain C3

40S RIBOSOMAL PROTEIN ES17

Chain U3

40S_SA_C domain-containing protein

Chain W3

S5 DRBM domain-containing protein