J3_6ZVK_015
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UUGAAAAG*CG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZVK_015 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.1447
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
6ZVK|1|e2|U|380
6ZVK|1|e2|U|381
6ZVK|1|e2|G|382
6ZVK|1|e2|A|383
6ZVK|1|e2|A|384
6ZVK|1|e2|A|385
6ZVK|1|e2|A|386
6ZVK|1|e2|G|387
*
6ZVK|1|e2|C|414
6ZVK|1|e2|G|415
*
6ZVK|1|h2|C|19
6ZVK|1|h2|A|20
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
- Chain h2
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain D2
- ribosomal protein eL39
- Chain o2
- Ribosomal protein L26
- Chain t2
- uL4
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