J3_6ZVK_024

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6ZVK|1|e2|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZVK_024 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1324

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6ZVK|1|e2|C|2393
6ZVK|1|e2|G|2394
6ZVK|1|e2|A|2395
6ZVK|1|e2|A|2396
6ZVK|1|e2|G|2397
6ZVK|1|e2|U|2398
6ZVK|1|e2|G|2399
*
6ZVK|1|e2|C|2805
6ZVK|1|e2|A|2806
6ZVK|1|e2|A|2807
*
6ZVK|1|e2|U|2819
6ZVK|1|e2|C|2820
6ZVK|1|e2|U|2821
6ZVK|1|e2|G|2822

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 32

60S RIBOSOMAL PROTEIN EL19

Chain y2

eL34