J3_6ZVK_043
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 6ZVK|1|e2|U|354, 6ZVK|1|e2|A|362, 6ZVK|1|h2|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZVK_043 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0897
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6ZVK|1|e2|C|351
6ZVK|1|e2|G|352
6ZVK|1|e2|A|353
6ZVK|1|e2|U|354
6ZVK|1|e2|A|355
6ZVK|1|e2|G|356
6ZVK|1|e2|U|357
6ZVK|1|e2|C|358
6ZVK|1|e2|A|359
6ZVK|1|e2|A|360
6ZVK|1|e2|C|361
6ZVK|1|e2|A|362
6ZVK|1|e2|A|363
6ZVK|1|e2|G|364
6ZVK|1|e2|U|365
6ZVK|1|e2|A|366
6ZVK|1|e2|C|367
*
6ZVK|1|e2|G|374
6ZVK|1|e2|G|375
6ZVK|1|e2|A|376
6ZVK|1|e2|A|377
6ZVK|1|e2|A|378
6ZVK|1|e2|G|379
*
6ZVK|1|h2|C|21
6ZVK|1|h2|U|22
6ZVK|1|h2|C|23
6ZVK|1|h2|G|24
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
- Chain h2
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain C2
- Ribosomal protein L37
- Chain D2
- ribosomal protein eL39
- Chain o2
- Ribosomal protein L26
- Chain t2
- uL4
Coloring options: