J3_6ZVK_044
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 6ZVK|1|e2|G|409, 6ZVK|1|e2|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZVK_044 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.3242
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6ZVK|1|e2|U|380
6ZVK|1|e2|U|381
6ZVK|1|e2|G|382
6ZVK|1|e2|A|383
6ZVK|1|e2|A|384
6ZVK|1|e2|A|385
6ZVK|1|e2|A|386
6ZVK|1|e2|G|387
6ZVK|1|e2|A|388
6ZVK|1|e2|A|389
6ZVK|1|e2|C|390
*
6ZVK|1|e2|G|401
6ZVK|1|e2|A|402
6ZVK|1|e2|G|403
6ZVK|1|e2|U|404
6ZVK|1|e2|U|405
6ZVK|1|e2|C|406
6ZVK|1|e2|A|407
6ZVK|1|e2|A|408
6ZVK|1|e2|G|409
6ZVK|1|e2|A|410
6ZVK|1|e2|G|411
6ZVK|1|e2|G|412
6ZVK|1|e2|G|413
6ZVK|1|e2|C|414
6ZVK|1|e2|G|415
*
6ZVK|1|h2|C|19
6ZVK|1|h2|A|20
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
- Chain h2
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain D2
- ribosomal protein eL39
- Chain H2
- uL22
- Chain o2
- Ribosomal protein L26
- Chain t2
- uL4
Coloring options: