J3_6ZVK_049

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZVK_049 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1756

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6ZVK|1|e2|A|2598
6ZVK|1|e2|G|2599
6ZVK|1|e2|A|2600
6ZVK|1|e2|A|2601
6ZVK|1|e2|G|2602
*
6ZVK|1|e2|C|2737
6ZVK|1|e2|C|2738
*
6ZVK|1|e2|G|2742
6ZVK|1|e2|A|2743
6ZVK|1|e2|A|2744
6ZVK|1|e2|A|2745
6ZVK|1|e2|A|2746
6ZVK|1|e2|U|2747

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 92

60S RIBOSOMAL PROTEIN UL2

Chain I2

ribosomal protein eL43

Chain y2

eL34