J3_6ZVK_051
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 6ZVK|1|e2|U|4374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZVK_051 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0908
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6ZVK|1|e2|G|4228
6ZVK|1|e2|U|4229
6ZVK|1|e2|C|4230
*
6ZVK|1|e2|G|4331
6ZVK|1|e2|C|4332
6ZVK|1|e2|C|4333
6ZVK|1|e2|U|4334
6ZVK|1|e2|C|4335
6ZVK|1|e2|A|4336
6ZVK|1|e2|C|4337
6ZVK|1|e2|G|4338
6ZVK|1|e2|A|4339
6ZVK|1|e2|U|4340
6ZVK|1|e2|C|4341
6ZVK|1|e2|C|4342
*
6ZVK|1|e2|G|4370
6ZVK|1|e2|G|4371
6ZVK|1|e2|U|4372
6ZVK|1|e2|G|4373
6ZVK|1|e2|U|4374
6ZVK|1|e2|C|4375
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 72
- eL21
- Chain F2
- eL42
- Chain S2
- 60S RIBOSOMAL PROTEIN EL18
- Chain q2
- uL15
Coloring options: