J3_6ZXD_001
3D structure
- PDB id
- 6ZXD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AG*CGCAAAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZXD_001 not in the Motif Atlas
- Geometric match to J3_4V88_078
- Geometric discrepancy: 0.0923
- The information below is about J3_4V88_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.1
- Basepair signature
- cWW-F-cWW-F-F-cSW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZXD|1|2|A|40
6ZXD|1|2|G|41
*
6ZXD|1|2|C|481
6ZXD|1|2|G|482
6ZXD|1|2|C|483
6ZXD|1|2|A|484
6ZXD|1|2|A|485
6ZXD|1|2|A|486
6ZXD|1|2|U|487
*
6ZXD|1|2|A|512
6ZXD|1|2|G|513
6ZXD|1|2|U|514
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain J
- 40S ribosomal protein S9
- Chain X
- 40S ribosomal protein S23
- Chain k
- Leucine-rich repeat-containing protein 47
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