J3_6ZXD_013

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6ZXD|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZXD_013 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.074

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZXD|1|2|A|40
6ZXD|1|2|G|41
6ZXD|1|2|A|42
6ZXD|1|2|U|43
6ZXD|1|2|U|44
6ZXD|1|2|A|45
6ZXD|1|2|A|46
6ZXD|1|2|G|47
*
6ZXD|1|2|C|479
6ZXD|1|2|G|480
6ZXD|1|2|C|481
6ZXD|1|2|G|482
6ZXD|1|2|C|483
6ZXD|1|2|A|484
6ZXD|1|2|A|485
6ZXD|1|2|A|486
6ZXD|1|2|U|487
*
6ZXD|1|2|A|512
6ZXD|1|2|G|513
6ZXD|1|2|U|514

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain k

Leucine-rich repeat-containing protein 47