J3_6ZXE_013

3D structure

PDB id

6ZXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACCACCAG*CCAGUAA*UGAUUAAGUCCCU

Length

28 nucleotides

Bulged bases

6ZXE|1|2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXE|1|2|A|1214
6ZXE|1|2|C|1215
6ZXE|1|2|C|1216
6ZXE|1|2|A|1217
6ZXE|1|2|C|1218
6ZXE|1|2|C|1219
6ZXE|1|2|A|1220
6ZXE|1|2|G|1221
*
6ZXE|1|2|C|1645
6ZXE|1|2|C|1646
6ZXE|1|2|A|1647
6ZXE|1|2|G|1648
6ZXE|1|2|U|1649
6ZXE|1|2|A|1650
6ZXE|1|2|A|1651
*
6ZXE|1|2|U|1673
6ZXE|1|2|G|1674
6ZXE|1|2|A|1675
6ZXE|1|2|U|1676
6ZXE|1|2|U|1677
6ZXE|1|2|A|1678
6ZXE|1|2|A|1679
6ZXE|1|2|G|1680
6ZXE|1|2|U|1681
6ZXE|1|2|C|1682
6ZXE|1|2|C|1683
6ZXE|1|2|C|1684
6ZXE|1|2|U|1685

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16

Chain c

40S ribosomal protein S28

Chain x

RNA-binding protein PNO1

Chain y

RNA-binding protein NOB1