J3_6ZXE_015

3D structure

PDB id

6ZXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCCGGAC*GGGUG*UUAGAUGUC

Length

22 nucleotides

Bulged bases

6ZXE|1|2|G|1274, 6ZXE|1|2|G|1507, 6ZXE|1|2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXE|1|2|G|1270
6ZXE|1|2|C|1271
6ZXE|1|2|C|1272
6ZXE|1|2|C|1273
6ZXE|1|2|G|1274
6ZXE|1|2|G|1275
6ZXE|1|2|A|1276
6ZXE|1|2|C|1277
*
6ZXE|1|2|G|1320
6ZXE|1|2|G|1321
6ZXE|1|2|G|1322
6ZXE|1|2|U|1323
6ZXE|1|2|G|1324
*
6ZXE|1|2|U|1504
6ZXE|1|2|U|1505
6ZXE|1|2|A|1506
6ZXE|1|2|G|1507
6ZXE|1|2|A|1508
6ZXE|1|2|U|1509
6ZXE|1|2|G|1510
6ZXE|1|2|U|1511
6ZXE|1|2|C|1512

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a