J3_6ZXG_013

3D structure

PDB id

6ZXG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*(A2M)GU

Length

20 nucleotides

Bulged bases

6ZXG|1|2|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZXG_013 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0518

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZXG|1|2|A|40
6ZXG|1|2|G|41
6ZXG|1|2|A|42
6ZXG|1|2|U|43
6ZXG|1|2|U|44
6ZXG|1|2|A|45
6ZXG|1|2|A|46
6ZXG|1|2|G|47
*
6ZXG|1|2|C|479
6ZXG|1|2|G|480
6ZXG|1|2|C|481
6ZXG|1|2|G|482
6ZXG|1|2|C|483
6ZXG|1|2|A2M|484
6ZXG|1|2|A|485
6ZXG|1|2|A|486
6ZXG|1|2|U|487
*
6ZXG|1|2|A2M|512
6ZXG|1|2|G|513
6ZXG|1|2|U|514

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain k

Leucine-rich repeat-containing protein 47