J3_6ZXG_014
3D structure
- PDB id
- 6ZXG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 6ZXG|1|2|G|1256, 6ZXG|1|2|A|1258, 6ZXG|1|2|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZXG_014 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.1374
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ZXG|1|2|C|1237
6ZXG|1|2|PSU|1238
6ZXG|1|2|U|1239
6ZXG|1|2|A|1240
6ZXG|1|2|A|1241
6ZXG|1|2|U|1242
6ZXG|1|2|U|1243
6ZXG|1|2|PSU|1244
*
6ZXG|1|2|G|1255
6ZXG|1|2|G|1256
6ZXG|1|2|G|1257
6ZXG|1|2|A|1258
6ZXG|1|2|A|1259
6ZXG|1|2|A|1260
6ZXG|1|2|C|1261
6ZXG|1|2|C|1262
6ZXG|1|2|U|1263
6ZXG|1|2|C|1264
6ZXG|1|2|A|1265
6ZXG|1|2|C|1266
*
6ZXG|1|2|G|1516
6ZXG|1|2|G|1517
6ZXG|1|2|C|1518
6ZXG|1|2|U|1519
6ZXG|1|2|G|1520
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain P
- 40S ribosomal protein S15
- Chain S
- 40S ribosomal protein S18
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29
- Chain j
- Probable RNA-binding protein EIF1AD
- Chain z
- Serine/threonine-protein kinase RIO1
Coloring options: