J3_6ZXH_015
3D structure
- PDB id
- 6ZXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 6ZXH|1|2|G|1256, 6ZXH|1|2|A|1258, 6ZXH|1|2|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZXH_015 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.1377
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6ZXH|1|2|C|1237
6ZXH|1|2|PSU|1238
6ZXH|1|2|U|1239
6ZXH|1|2|A|1240
6ZXH|1|2|A|1241
6ZXH|1|2|U|1242
6ZXH|1|2|U|1243
6ZXH|1|2|PSU|1244
*
6ZXH|1|2|G|1255
6ZXH|1|2|G|1256
6ZXH|1|2|G|1257
6ZXH|1|2|A|1258
6ZXH|1|2|A|1259
6ZXH|1|2|A|1260
6ZXH|1|2|C|1261
6ZXH|1|2|C|1262
6ZXH|1|2|U|1263
6ZXH|1|2|C|1264
6ZXH|1|2|A|1265
6ZXH|1|2|C|1266
*
6ZXH|1|2|G|1516
6ZXH|1|2|G|1517
6ZXH|1|2|C|1518
6ZXH|1|2|U|1519
6ZXH|1|2|G|1520
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain P
- 40S ribosomal protein S15
- Chain S
- 40S ribosomal protein S18
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29
- Chain j
- Probable RNA-binding protein EIF1AD
- Chain z
- Serine/threonine-protein kinase RIO1
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