J3_7A01_001
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AG*CGCAAAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7A01_001 not in the Motif Atlas
- Homologous match to J3_8C3A_082
- Geometric discrepancy: 0.2648
- The information below is about J3_8C3A_082
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.2
- Basepair signature
- cWW-F-cWW-F-F-cSW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
7A01|1|K3|A|40
7A01|1|K3|G|41
*
7A01|1|K3|C|481
7A01|1|K3|G|482
7A01|1|K3|C|483
7A01|1|K3|A|484
7A01|1|K3|A|485
7A01|1|K3|A|486
7A01|1|K3|U|487
*
7A01|1|K3|A|512
7A01|1|K3|G|513
7A01|1|K3|U|514
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain T3
- Ribosomal protein S23
- Chain d3
- Ribosomal protein S9 (Predicted)
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