3D structure

PDB id
7A01 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
AG*CGCAAAU*AGU
Length
12 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7A01_001 not in the Motif Atlas
Homologous match to J3_8C3A_082
Geometric discrepancy: 0.2648
The information below is about J3_8C3A_082
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.2
Basepair signature
cWW-F-cWW-F-F-cSW-F-cWW
Number of instances in this motif group
5

Unit IDs

7A01|1|K3|A|40
7A01|1|K3|G|41
*
7A01|1|K3|C|481
7A01|1|K3|G|482
7A01|1|K3|C|483
7A01|1|K3|A|484
7A01|1|K3|A|485
7A01|1|K3|A|486
7A01|1|K3|U|487
*
7A01|1|K3|A|512
7A01|1|K3|G|513
7A01|1|K3|U|514

Current chains

Chain K3
18S RIBOSOMAL RNA

Nearby chains

Chain T3
Ribosomal protein S23
Chain d3
Ribosomal protein S9 (Predicted)

Coloring options:


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