J3_7A01_005
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7A01_005 not in the Motif Atlas
- Homologous match to J3_9PN5_035
- Geometric discrepancy: 0.3336
- The information below is about J3_9PN5_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.3
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
7A01|1|K3|C|1218
7A01|1|K3|C|1219
7A01|1|K3|A|1220
7A01|1|K3|G|1221
*
7A01|1|K3|C|1645
7A01|1|K3|C|1646
7A01|1|K3|A|1647
7A01|1|K3|G|1648
7A01|1|K3|U|1649
7A01|1|K3|A|1650
7A01|1|K3|A|1651
*
7A01|1|K3|U|1673
7A01|1|K3|G|1674
7A01|1|K3|A|1675
7A01|1|K3|U|1676
7A01|1|K3|U|1677
7A01|1|K3|A|1678
7A01|1|K3|A|1679
7A01|1|K3|G|1680
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain B3
- Uncharacterized protein
- Chain N3
- Ribosomal protein S5
- Chain f3
- ribosomal protein eS28
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