J3_7A01_005

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|K3|C|1218
7A01|1|K3|C|1219
7A01|1|K3|A|1220
7A01|1|K3|G|1221
*
7A01|1|K3|C|1645
7A01|1|K3|C|1646
7A01|1|K3|A|1647
7A01|1|K3|G|1648
7A01|1|K3|U|1649
7A01|1|K3|A|1650
7A01|1|K3|A|1651
*
7A01|1|K3|U|1673
7A01|1|K3|G|1674
7A01|1|K3|A|1675
7A01|1|K3|U|1676
7A01|1|K3|U|1677
7A01|1|K3|A|1678
7A01|1|K3|A|1679
7A01|1|K3|G|1680

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain B3

Uncharacterized protein

Chain N3

Ribosomal protein S5

Chain f3

ribosomal protein eS28