J3_7A01_008

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGGAC*GGGUGG*CUUAGAUG

Length

20 nucleotides

Bulged bases

7A01|1|K3|G|1274, 7A01|1|K3|G|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|K3|C|1272
7A01|1|K3|C|1273
7A01|1|K3|G|1274
7A01|1|K3|G|1275
7A01|1|K3|A|1276
7A01|1|K3|C|1277
*
7A01|1|K3|G|1320
7A01|1|K3|G|1321
7A01|1|K3|G|1322
7A01|1|K3|U|1323
7A01|1|K3|G|1324
7A01|1|K3|G|1325
*
7A01|1|K3|C|1503
7A01|1|K3|U|1504
7A01|1|K3|U|1505
7A01|1|K3|A|1506
7A01|1|K3|G|1507
7A01|1|K3|A|1508
7A01|1|K3|U|1509
7A01|1|K3|G|1510

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain E3

S10_plectin domain-containing protein

Chain H3

ribosomal protein uS14

Chain Q3

40S ribosomal protein S27a