J3_9SUM_035

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CCAGAC*GGGUGG*CUUAGACG

Length

20 nucleotides

Bulged bases

9SUM|1|CA|A|1187, 9SUM|1|CA|G|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SUM|1|CA|C|1185
9SUM|1|CA|C|1186
9SUM|1|CA|A|1187
9SUM|1|CA|G|1188
9SUM|1|CA|A|1189
9SUM|1|CA|C|1190
*
9SUM|1|CA|G|1233
9SUM|1|CA|G|1234
9SUM|1|CA|G|1235
9SUM|1|CA|U|1236
9SUM|1|CA|G|1237
9SUM|1|CA|G|1238
*
9SUM|1|CA|C|1417
9SUM|1|CA|U|1418
9SUM|1|CA|U|1419
9SUM|1|CA|A|1420
9SUM|1|CA|G|1421
9SUM|1|CA|A|1422
9SUM|1|CA|C|1423
9SUM|1|CA|G|1424

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZC

40S ribosomal protein S10-A

Chain ZV

Small ribosomal subunit protein uS14