J3_7A01_009
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7A01_009 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.3891
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7A01|1|K3|U|1340
7A01|1|K3|C|1341
7A01|1|K3|U|1342
7A01|1|K3|U|1343
7A01|1|K3|A|1344
7A01|1|K3|G|1345
*
7A01|1|K3|C|1384
7A01|1|K3|G|1385
7A01|1|K3|A|1386
7A01|1|K3|G|1387
7A01|1|K3|A|1388
7A01|1|K3|C|1389
*
7A01|1|K3|G|1481
7A01|1|K3|C|1482
7A01|1|K3|A|1483
7A01|1|K3|A|1484
7A01|1|K3|U|1485
7A01|1|K3|A|1486
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain B3
- Uncharacterized protein
- Chain C3
- Uncharacterized protein
- Chain H3
- ribosomal protein uS14
- Chain I3
- Ribosomal_S10 domain-containing protein
- Chain W3
- S5 DRBM domain-containing protein
- Chain Y3
- Ribosomal protein S3
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