J3_7A01_010

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7A01_010 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.3404

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7A01|1|K3|U|1350
7A01|1|K3|G|1351
*
7A01|1|K3|U|1360
7A01|1|K3|G|1361
7A01|1|K3|U|1362
7A01|1|K3|C|1363
*
7A01|1|K3|G|1375
7A01|1|K3|A|1376
7A01|1|K3|U|1377
7A01|1|K3|A|1378
7A01|1|K3|A|1379

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain C3

Uncharacterized protein

Chain U3

40S_SA_C domain-containing protein

Chain W3

S5 DRBM domain-containing protein