J3_7A01_015

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGAAAAG*CG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7A01_015 not in the Motif Atlas

Homologous match to J3_5TBW_002

Geometric discrepancy: 0.1432

The information below is about J3_5TBW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

7A01|1|e2|U|380
7A01|1|e2|U|381
7A01|1|e2|G|382
7A01|1|e2|A|383
7A01|1|e2|A|384
7A01|1|e2|A|385
7A01|1|e2|A|386
7A01|1|e2|G|387
*
7A01|1|e2|C|414
7A01|1|e2|G|415
*
7A01|1|h2|C|19
7A01|1|h2|A|20

Current chains

Chain e2

28S RIBOSOMAL RNA

Chain h2

5.8S RIBOSOMAL RNA

Nearby chains

Chain D2

ribosomal protein eL39

Chain o2

Ribosomal protein L26

Chain t2

uL4