J3_7A01_020
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCAG*CGUAG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 7A01|1|e2|A|1613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7A01_020 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.1988
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
7A01|1|e2|G|1545
7A01|1|e2|C|1546
7A01|1|e2|A|1547
7A01|1|e2|G|1548
*
7A01|1|e2|C|1580
7A01|1|e2|G|1581
7A01|1|e2|U|1582
7A01|1|e2|A|1583
7A01|1|e2|G|1584
*
7A01|1|e2|U|1609
7A01|1|e2|C|1610
7A01|1|e2|C|1611
7A01|1|e2|G|1612
7A01|1|e2|A|1613
7A01|1|e2|C|1614
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 32
- 60S RIBOSOMAL PROTEIN EL19
- Chain 92
- Uncharacterized protein
- Chain I2
- ribosomal protein eL43
- Chain y2
- eL34
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