J3_7A01_023

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

7A01|1|e2|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7A01_023 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1327

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7A01|1|e2|C|2393
7A01|1|e2|G|2394
7A01|1|e2|A|2395
7A01|1|e2|A|2396
7A01|1|e2|G|2397
7A01|1|e2|U|2398
7A01|1|e2|G|2399
*
7A01|1|e2|C|2805
7A01|1|e2|A|2806
7A01|1|e2|A|2807
*
7A01|1|e2|U|2819
7A01|1|e2|C|2820
7A01|1|e2|U|2821
7A01|1|e2|G|2822

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 32

60S RIBOSOMAL PROTEIN EL19

Chain y2

eL34