J3_7A01_025
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7A01_025 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.189
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
7A01|1|e2|U|2440
7A01|1|e2|C|2441
7A01|1|e2|G|2442
7A01|1|e2|G|2443
7A01|1|e2|U|2444
7A01|1|e2|C|2445
*
7A01|1|e2|G|2515
7A01|1|e2|G|2516
7A01|1|e2|A|2517
7A01|1|e2|G|2518
7A01|1|e2|U|2519
*
7A01|1|e2|A|2536
7A01|1|e2|A|2537
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain D2
- ribosomal protein eL39
- Chain h2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain m2
- Uncharacterized protein
- Chain p2
- Uncharacterized protein
- Chain y2
- eL34
Coloring options: