J3_7A01_028

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7A01_028 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.396

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7A01|1|e2|C|3937
7A01|1|e2|G|3938
7A01|1|e2|G|3939
*
7A01|1|e2|C|4074
7A01|1|e2|U|4075
7A01|1|e2|G|4076
7A01|1|e2|A|4077
7A01|1|e2|C|4078
*
7A01|1|e2|G|4168
7A01|1|e2|G|4169
7A01|1|e2|A|4170
7A01|1|e2|C|4171
7A01|1|e2|A|4172
7A01|1|e2|G|4173

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 12

Ribosomal protein L15

Chain 92

Uncharacterized protein

Chain V2

60S RIBOSOMAL PROTEIN EL8