J3_7A01_040
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 7A01|1|e2|U|354, 7A01|1|e2|A|362, 7A01|1|h2|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7A01_040 not in the Motif Atlas
- Homologous match to J3_8C3A_047
- Geometric discrepancy: 0.1002
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
7A01|1|e2|C|351
7A01|1|e2|G|352
7A01|1|e2|A|353
7A01|1|e2|U|354
7A01|1|e2|A|355
7A01|1|e2|G|356
7A01|1|e2|U|357
7A01|1|e2|C|358
7A01|1|e2|A|359
7A01|1|e2|A|360
7A01|1|e2|C|361
7A01|1|e2|A|362
7A01|1|e2|A|363
7A01|1|e2|G|364
7A01|1|e2|U|365
7A01|1|e2|A|366
7A01|1|e2|C|367
*
7A01|1|e2|G|374
7A01|1|e2|G|375
7A01|1|e2|A|376
7A01|1|e2|A|377
7A01|1|e2|A|378
7A01|1|e2|G|379
*
7A01|1|h2|C|21
7A01|1|h2|U|22
7A01|1|h2|C|23
7A01|1|h2|G|24
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
- Chain h2
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain C2
- Ribosomal protein L37
- Chain D2
- ribosomal protein eL39
- Chain o2
- Ribosomal protein L26
- Chain t2
- uL4
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