J3_7A01_048

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUC*GCCUCACGAUCC*GGUGUC

Length

21 nucleotides

Bulged bases

7A01|1|e2|U|4374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7A01_048 not in the Motif Atlas

Homologous match to J3_8C3A_056

Geometric discrepancy: 0.1541

The information below is about J3_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_27903.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F

Number of instances in this motif group

5

Unit IDs

7A01|1|e2|G|4228
7A01|1|e2|U|4229
7A01|1|e2|C|4230
*
7A01|1|e2|G|4331
7A01|1|e2|C|4332
7A01|1|e2|C|4333
7A01|1|e2|U|4334
7A01|1|e2|C|4335
7A01|1|e2|A|4336
7A01|1|e2|C|4337
7A01|1|e2|G|4338
7A01|1|e2|A|4339
7A01|1|e2|U|4340
7A01|1|e2|C|4341
7A01|1|e2|C|4342
*
7A01|1|e2|G|4370
7A01|1|e2|G|4371
7A01|1|e2|U|4372
7A01|1|e2|G|4373
7A01|1|e2|U|4374
7A01|1|e2|C|4375

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 72

eL21

Chain F2

eL42

Chain S2

60S RIBOSOMAL PROTEIN EL18

Chain q2

uL15