J3_7A09_001

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7A09_001 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.1372

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

7A09|1|2|A|40
7A09|1|2|G|41
*
7A09|1|2|C|481
7A09|1|2|G|482
7A09|1|2|C|483
7A09|1|2|A|484
7A09|1|2|A|485
7A09|1|2|A|486
7A09|1|2|U|487
*
7A09|1|2|A|512
7A09|1|2|G|513
7A09|1|2|U|514

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

ATP-binding cassette sub-family E member 1

Chain c

40S ribosomal protein S9

Chain j

40S ribosomal protein S23