J3_7A09_009
3D structure
- PDB id
- 7A09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human ABCE1-bound 43S pre-initiation complex - State III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCUUAG*CGAGACU*AGCAAUA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7A09_009 not in the Motif Atlas
- Geometric match to J3_4LFB_007
- Geometric discrepancy: 0.3783
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7A09|1|2|U|1340
7A09|1|2|C|1341
7A09|1|2|U|1342
7A09|1|2|U|1343
7A09|1|2|A|1344
7A09|1|2|G|1345
*
7A09|1|2|C|1384
7A09|1|2|G|1385
7A09|1|2|A|1386
7A09|1|2|G|1387
7A09|1|2|A|1388
7A09|1|2|C|1389
7A09|1|2|U|1390
*
7A09|1|2|A|1480
7A09|1|2|G|1481
7A09|1|2|C|1482
7A09|1|2|A|1483
7A09|1|2|A|1484
7A09|1|2|U|1485
7A09|1|2|A|1486
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain b
- 40S ribosomal protein S3
- Chain d
- 40S ribosomal protein S2
- Chain g
- 40S ribosomal protein S16
- Chain h
- 40S ribosomal protein S20
- Chain l
- 40S ribosomal protein S29
- Chain w
- 40S ribosomal protein S17
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