J3_7A0S_014

3D structure

PDB id

7A0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CCCAUAG*CGC*GUCAG

Length

15 nucleotides

Bulged bases

7A0S|1|Y|U|16, 7A0S|1|Y|C|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_13944.1

Basepair signature

cWW-F-F-tSS-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7A0S|1|Y|C|12
7A0S|1|Y|C|13
7A0S|1|Y|C|14
7A0S|1|Y|A|15
7A0S|1|Y|U|16
7A0S|1|Y|A|17
7A0S|1|Y|G|18
*
7A0S|1|Y|C|70
7A0S|1|Y|G|71
7A0S|1|Y|C|72
*
7A0S|1|Y|G|109
7A0S|1|Y|U|110
7A0S|1|Y|C|111
7A0S|1|Y|A|112
7A0S|1|Y|G|113

Current chains

Chain Y

RNA (122-MER)

Nearby chains

Chain L

50S ribosomal protein L18

Chain S

50S ribosomal protein L25

Chain T

50S ribosomal protein L27

Chain X

Large subunit ribosomal RNA; LSU rRNA