J3_7A0S_022

3D structure

PDB id

7A0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CAUAGACAGCCAGGAGG*CUUCAAAGAGUG*CUCACUGGUCGAG

Length

42 nucleotides

Bulged bases

7A0S|1|X|U|1056, 7A0S|1|X|A|1057, 7A0S|1|X|A|1099, 7A0S|1|X|G|1100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_13378.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-tWW-F-F-F

Number of instances in this motif group

1

Unit IDs

7A0S|1|X|C|1054
7A0S|1|X|A|1055
7A0S|1|X|U|1056
7A0S|1|X|A|1057
7A0S|1|X|G|1058
7A0S|1|X|A|1059
7A0S|1|X|C|1060
7A0S|1|X|A|1061
7A0S|1|X|G|1062
7A0S|1|X|C|1063
7A0S|1|X|C|1064
7A0S|1|X|A|1065
7A0S|1|X|G|1066
7A0S|1|X|G|1067
7A0S|1|X|A|1068
7A0S|1|X|G|1069
7A0S|1|X|G|1070
*
7A0S|1|X|C|1091
7A0S|1|X|U|1092
7A0S|1|X|U|1093
7A0S|1|X|C|1094
7A0S|1|X|A|1095
7A0S|1|X|A|1096
7A0S|1|X|A|1097
7A0S|1|X|G|1098
7A0S|1|X|A|1099
7A0S|1|X|G|1100
7A0S|1|X|U|1101
7A0S|1|X|G|1102
*
7A0S|1|X|C|1111
7A0S|1|X|U|1112
7A0S|1|X|C|1113
7A0S|1|X|A|1114
7A0S|1|X|C|1115
7A0S|1|X|U|1116
7A0S|1|X|G|1117
7A0S|1|X|G|1118
7A0S|1|X|U|1119
7A0S|1|X|C|1120
7A0S|1|X|G|1121
7A0S|1|X|A|1122
7A0S|1|X|G|1123

Current chains

Chain X

RNA (2732-MER)

Nearby chains

Chain E

50S ribosomal protein L6