Motif J3_13378.1 Version J3_13378.1 of this group appears in releases 3.88 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | break | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | break | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 1-38 | 3-37 | 4-38 | 7-35 | 11-21 | 11-30 | 13-17 | 15-16 | 18-22 | 23-28 | 25-26 | 32-33 | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_7A0S_022 | 7A0S | 0.0000 | 4 | X | LSU rRNA | C | 1054 | A | 1055 | G | 1058 | A | 1059 | C | 1060 | A | 1061 | G | 1062 | C | 1063 | C | 1064 | A | 1065 | G | 1066 | G | 1067 | A | 1068 | G | 1069 | G | 1070 | * | C | 1091 | U | 1092 | U | 1093 | C | 1094 | A | 1095 | A | 1096 | A | 1097 | G | 1098 | U | 1101 | G | 1102 | * | C | 1111 | U | 1112 | C | 1113 | A | 1114 | C | 1115 | U | 1116 | G | 1117 | G | 1118 | U | 1119 | C | 1120 | G | 1121 | A | 1122 | G | 1123 | ncWW | ntSH | ntSs | ncWS | ntSs | ncWW | ncWW | cWW | tWW | ncWW | ncWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUAGACAGCCAGGAGG*CUUCAAAGAGUG*CUCACUGGUCGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAGACAGCCAGGAG*UUCAAAGAGU*UCACUGGUCGA | 1 |
Release history
| Release | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-tWW-F-F-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: