J3_7A1G_014

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7A1G|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7A1G_014 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0645

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7A1G|1|2|A|41
7A1G|1|2|G|42
7A1G|1|2|A|43
7A1G|1|2|U|44
7A1G|1|2|U|45
7A1G|1|2|A|46
7A1G|1|2|A|47
7A1G|1|2|G|48
*
7A1G|1|2|C|431
7A1G|1|2|G|432
7A1G|1|2|C|433
7A1G|1|2|G|434
7A1G|1|2|C|435
7A1G|1|2|A|436
7A1G|1|2|A|437
7A1G|1|2|A|438
7A1G|1|2|U|439
*
7A1G|1|2|A|464
7A1G|1|2|G|465
7A1G|1|2|U|466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A

Chain x

Translation initiation factor RLI1