J3_7A5F_002

3D structure

PDB id

7A5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7A5F_002 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.153

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7A5F|1|A3|C|1930
7A5F|1|A3|A|1931
7A5F|1|A3|G|1932
*
7A5F|1|A3|C|1942
7A5F|1|A3|A|1943
7A5F|1|A3|C|1944
7A5F|1|A3|A|1945
7A5F|1|A3|C|1946
*
7A5F|1|A3|G|1970
7A5F|1|A3|A|1971
7A5F|1|A3|A|1972
7A5F|1|A3|G|1973

Current chains

Chain A3

16S rRNA

Nearby chains

Chain D3

39S ribosomal protein L2, mitochondrial