J3_7A5G_005

3D structure

PDB id

7A5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.33 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7A5G|1|A3|A|3005, 7A5G|1|A3|U|3006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7A5G_005 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1424

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7A5G|1|A3|C|3004
7A5G|1|A3|A|3005
7A5G|1|A3|U|3006
7A5G|1|A3|C|3007
*
7A5G|1|A3|G|3032
7A5G|1|A3|U|3033
7A5G|1|A3|U|3034
*
7A5G|1|A3|A|3048
7A5G|1|A3|U|3049
7A5G|1|A3|U|3050
7A5G|1|A3|A|3051
7A5G|1|A3|A|3052
7A5G|1|A3|A|3053
7A5G|1|A3|G|3054

Current chains

Chain A3

16S rRNA

Nearby chains

Chain E3

39S ribosomal protein L3, mitochondrial

Chain L3

39S ribosomal protein L14, mitochondrial

Chain r3

39S ribosomal protein S18a, mitochondrial