J3_7ABZ_014

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ABZ_014 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1725

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7ABZ|1|2|G|46
7ABZ|1|2|C|47
*
7ABZ|1|2|G|361
7ABZ|1|2|G|362
7ABZ|1|2|A|363
7ABZ|1|2|A|364
7ABZ|1|2|U|365
7ABZ|1|2|A|366
7ABZ|1|2|U|367
*
7ABZ|1|2|A|393
7ABZ|1|2|G|394
7ABZ|1|2|C|395

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 6

Elongation factor Tu 2

Chain q

30S ribosomal protein S12

Chain u

30S ribosomal protein S16