3D structure

PDB id
7ABZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.21 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
7ABZ|1|1|A|2388, 7ABZ|1|1|C|2422, 7ABZ|1|1|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7ABZ_030 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.1877
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

7ABZ|1|1|G|2282
7ABZ|1|1|C|2283
7ABZ|1|1|A|2284
*
7ABZ|1|1|U|2384
7ABZ|1|1|C|2385
7ABZ|1|1|A|2386
7ABZ|1|1|U|2387
7ABZ|1|1|A|2388
7ABZ|1|1|G|2389
7ABZ|1|1|U|2390
7ABZ|1|1|G|2391
7ABZ|1|1|A|2392
7ABZ|1|1|U|2393
7ABZ|1|1|C|2394
7ABZ|1|1|C|2395
*
7ABZ|1|1|G|2421
7ABZ|1|1|C|2422
7ABZ|1|1|U|2423
7ABZ|1|1|C|2424
7ABZ|1|1|A|2425
7ABZ|1|1|A|2426
7ABZ|1|1|C|2427

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain A
50S ribosomal protein L27
Chain L
50S ribosomal protein L15
Chain c
50S ribosomal protein L33
Chain e
50S ribosomal protein L35

Coloring options:


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