J3_7AC7_011

3D structure

PDB id

7AC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of accomodated trans-translation complex on E. Coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

7AC7|1|1|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AC7_011 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.145

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7AC7|1|1|C|2517
7AC7|1|1|A|2518
7AC7|1|1|U|2519
7AC7|1|1|C|2520
*
7AC7|1|1|G|2545
7AC7|1|1|U|2546
7AC7|1|1|A|2547
*
7AC7|1|1|U|2561
7AC7|1|1|U|2562
7AC7|1|1|U|2563
7AC7|1|1|A|2564
7AC7|1|1|A|2565
7AC7|1|1|A|2566
7AC7|1|1|G|2567

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14