J3_7ACJ_013

3D structure

PDB id

7ACJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

7ACJ|1|2|U|365

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ACJ_013 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.2082

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7ACJ|1|2|G|46
7ACJ|1|2|C|47
*
7ACJ|1|2|G|361
7ACJ|1|2|G|362
7ACJ|1|2|A|363
7ACJ|1|2|A|364
7ACJ|1|2|U|365
7ACJ|1|2|A|366
7ACJ|1|2|U|367
*
7ACJ|1|2|A|393
7ACJ|1|2|G|394
7ACJ|1|2|C|395

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain u

30S ribosomal protein S16