J3_7ACJ_038

3D structure

PDB id

7ACJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUCUGGAUUCGACGG*UUCGGACGCGGG*CCCGCC

Length

35 nucleotides

Bulged bases

7ACJ|1|4|A|8, 7ACJ|1|4|U|12, 7ACJ|1|4|G|13, 7ACJ|1|4|G|14, 7ACJ|1|4|U|16, 7ACJ|1|4|U|17, 7ACJ|1|4|C|18, 7ACJ|1|4|G|19, 7ACJ|1|4|G|333

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ACJ|1|4|G|7
7ACJ|1|4|A|8
7ACJ|1|4|U|9
7ACJ|1|4|U|10
7ACJ|1|4|C|11
7ACJ|1|4|U|12
7ACJ|1|4|G|13
7ACJ|1|4|G|14
7ACJ|1|4|A|15
7ACJ|1|4|U|16
7ACJ|1|4|U|17
7ACJ|1|4|C|18
7ACJ|1|4|G|19
7ACJ|1|4|A|20
7ACJ|1|4|C|21
7ACJ|1|4|G|22
7ACJ|1|4|G|23
*
7ACJ|1|4|U|329
7ACJ|1|4|U|330
7ACJ|1|4|C|331
7ACJ|1|4|G|332
7ACJ|1|4|G|333
7ACJ|1|4|A|334
7ACJ|1|4|C|335
7ACJ|1|4|G|336
7ACJ|1|4|C|337
7ACJ|1|4|G|338
7ACJ|1|4|G|339
7ACJ|1|4|G|340
*
7ACJ|1|4|C|348
7ACJ|1|4|C|349
7ACJ|1|4|C|350
7ACJ|1|4|G|351
7ACJ|1|4|C|352
7ACJ|1|4|C|353

Current chains

Chain 4

transfer-messanger RNA (tmRNA)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 5

SsrA-binding protein

Chain A

50S ribosomal protein L27

Chain E

50S ribosomal protein L5

Chain M

50S ribosomal protein L16

Chain r

30S ribosomal protein S13

Chain x

30S ribosomal protein S19