3D structure

PDB id
7AF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state I (head domain)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
UG*UGUUG*CGCAA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7AF5_007 not in the Motif Atlas
Homologous match to J3_5J7L_009
Geometric discrepancy: 0.1501
The information below is about J3_5J7L_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76043.3
Basepair signature
cWW-cWW-tSS-F-F-F-F-cWW
Number of instances in this motif group
3

Unit IDs

7AF5|1|1|U|1073
7AF5|1|1|G|1074
*
7AF5|1|1|U|1083
7AF5|1|1|G|1084
7AF5|1|1|U|1085
7AF5|1|1|U|1086
7AF5|1|1|G|1087
*
7AF5|1|1|C|1098
7AF5|1|1|G|1099
7AF5|1|1|C|1100
7AF5|1|1|A|1101
7AF5|1|1|A|1102

Current chains

Chain 1
16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain B
30S ribosomal protein S2

Coloring options:


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